If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ), 'gf_id' => 'HOM05D000736', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000736' ), 'data_identifier' => 'HOM05D000736', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000736', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '794', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02510' => 'bna', 'A02p19640' => 'bna', 'A02p29820' => 'bna', 'A03p44380' => 'bna', 'A06p15410' => 'bna', 'A06p46020' => 'bna', 'A07p29130' => 'bna', 'A07p40600' => 'bna', 'A09p22220' => 'bna', 'A09p45750' => 'bna', 'Aa31LG4G5170' => 'aar', 'Aa31LG4G5420' => 'aar', 'Aa31LG6G940' => 'aar', 'Aa31LG7G3970' => 'aar', 'Aa31LG9G6600' => 'aar', 'Aa31sc76G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1652' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2733' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.671' => 'aag', 'Actinidia02676' => 'ach', 'Actinidia02677' => 'ach', 'Actinidia04178' => 'ach', 'Actinidia08654' => 'ach', 'Actinidia16721' => 'ach', 'Actinidia17451' => 'ach', 'Actinidia19516' => 'ach', 'Actinidia22179' => 'ach', 'Actinidia24449' => 'ach', 'Actinidia24450' => 'ach', 'Actinidia28398' => 'ach', 'Actinidia29945' => 'ach', 'Actinidia30248' => 'ach', 'Actinidia34226' => 'ach', 'Actinidia38487' => 'ach', 'Actinidia38488' => 'ach', 'Actinidia39562' => 'ach', 'Actinidia39628' => 'ach', 'Actinidia39629' => 'ach', 'Ah.09g229230' => 'amhyb', 'Ah.09g232710' => 'amhyb', 'Ah.14g086520' => 'amhyb', 'AL1G31840' => 'aly', 'AL2G34850' => 'aly', 'AL3G42180' => 'aly', 'AL4G29980' => 'aly', 'AL8G12170' => 'aly', 'Aqoxy1G01749' => 'aox', 'Aqoxy1G04108' => 'aox', 'Aqoxy5G04239' => 'aox', 'Aqoxy6G00564' => 'aox', 'Aqoxy7G04090' => 'aox', 'arahy.Tifrunner.gnm1.ann1.39SMC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ7TKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6FJSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCU9ZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1XSI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4YVHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WITA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X916ZF' => 'arhy', 'AT1G74960' => 'ath', 'AT2G04540' => 'ath', 'AT5G46290' => 'ath', 'ATR0044G021' => 'atr', 'ATR0602G022' => 'atr', 'ATR0602G051' => 'atr', 'ATR0681G384' => 'atr', 'ATR1101G028' => 'atr', 'Atru.chr10.1318' => 'acertr', 'Atru.chr6.3280' => 'acertr', 'Atru.chr6.3296' => 'acertr', 'Atru.chr7.1750' => 'acertr', 'Atru.chr9.1933' => 'acertr', 'AUR62015104' => 'cqu', 'AUR62015105' => 'cqu', 'AUR62017566' => 'cqu', 'AUR62025278' => 'cqu', 'AUR62027604' => 'cqu', 'AUR62028282' => 'cqu', 'AUR62030236' => 'cqu', 'BcaB02g06976' => 'bca', 'BcaB03g16111' => 'bca', 'BcaB04g20671' => 'bca', 'BcaB05g24880' => 'bca', 'BcaB06g25882' => 'bca', 'BcaB06g25883' => 'bca', 'BcaB07g30844' => 'bca', 'BcaB07g31942' => 'bca', 'BcaB07g34061' => 'bca', 'BcaB08g34480' => 'bca', 'BcaB08g36033' => 'bca', 'BcaC01g03196' => 'bca', 'BcaC03g13100' => 'bca', 'BcaC03g15536' => 'bca', 'BcaC03g16843' => 'bca', 'BcaC04g21711' => 'bca', 'BcaC06g31484' => 'bca', 'BcaC08g45980' => 'bca', 'BcaC08g46929' => 'bca', 'BcaC08g46960' => 'bca', 'BcaNung05983' => 'bca', 'BcaNung06475' => 'bca', 'BolC1t02963H' => 'bol', 'BolC1t03300H' => 'bol', 'BolC2t05994H' => 'bol', 'BolC2t09255H' => 'bol', 'BolC2t10767H' => 'bol', 'BolC3t17774H' => 'bol', 'BolC5t30471H' => 'bol', 'BolC6t38418H' => 'bol', 'BolC6t39934H' => 'bol', 'BolC7t43500H' => 'bol', 'BolC9t55714H' => 'bol', 'BraA01t01586Z' => 'bra', 'BraA02t07000Z' => 'bra', 'BraA02t08003Z' => 'bra', 'BraA03t13568Z' => 'bra', 'BraA06t24654Z' => 'bra', 'BraA06t27466Z' => 'bra', 'BraA07t30552Z' => 'bra', 'BraA07t31604Z' => 'bra', 'BraA09t37826Z' => 'bra', 'BraA09t40038Z' => 'bra', 'C01p30220' => 'bna', 'C01p33540' => 'bna', 'C01p42810' => 'bna', 'C02p32170' => 'bna', 'C02p47230' => 'bna', 'C02p47250' => 'bna', 'C02p51570' => 'bna', 'C03p54990' => 'bna', 'C05p17660' => 'bna', 'C05p58540' => 'bna', 'C06p32990' => 'bna', 'C06p48970' => 'bna', 'C07p29510' => 'bna', 'C08p37600' => 'bna', 'C09p28380' => 'bna', 'CAN.G194.17' => 'can', 'CAN.G215.4' => 'can', 'CAN.G338.55' => 'can', 'CAN.G52.9' => 'can', 'CAN.G524.39' => 'can', 'CAN.G567.19' => 'can', 'CAN.G567.20' => 'can', 'CAN.G567.22' => 'can', 'CAN.G650.48' => 'can', 'CAN.G741.31' => 'can', 'CAN.G784.5' => 'can', 'CAN.G788.1' => 'can', 'CAN.G816.16' => 'can', 'CAN.G862.35' => 'can', 'CANSAT21G2510' => 'cansat', 'CANSAT35G1172' => 'cansat', 'CANSAT56G0799' => 'cansat', 'CANSAT56G0994' => 'cansat', 'CANSAT56G1663' => 'cansat', 'CANSAT64G0309' => 'cansat', 'CARHR019860' => 'chi', 'CARHR055950' => 'chi', 'CARHR068280' => 'chi', 'CARHR102430' => 'chi', 'CARHR175510' => 'chi', 'Carub.0001s1886' => 'cru', 'Carub.0002s2175' => 'cru', 'Carub.0003s2617' => 'cru', 'Carub.0008s0162' => 'cru', 'Ca_02245_v3' => 'car', 'Ca_09638_v3' => 'car', 'Ca_17462_v3' => 'car', 'Ca_18270_v3' => 'car', 'Ca_21330_v3' => 'car', 'CBR_g26011' => 'cbr', 'CBR_g3177' => 'cbr', 'CBR_g41120' => 'cbr', 'Cc04_g01000' => 'ccan', 'Cc04_g10360' => 'ccan', 'Cc06_g12570' => 'ccan', 'Cc08_g16320' => 'ccan', 'Cc09_g09220' => 'ccan', 'CDE03G0294' => 'cde', 'CDE04G1497' => 'cde', 'CDE05G0071' => 'cde', 'CDE05G2781' => 'cde', 'CDE05G3488' => 'cde', 'CDE07G0785' => 'cde', 'Cfa000963' => 'cfa', 'Cfa005091' => 'cfa', 'Cfa011977' => 'cfa', 'Cfa014296' => 'cfa', 'Cfa021597' => 'cfa', 'Cfa022152' => 'cfa', 'Cfa025045' => 'cfa', 'Ciclev10007846m.g' => 'ccl', 'Ciclev10015116m.g' => 'ccl', 'Ciclev10015139m.g' => 'ccl', 'Ciclev10019855m.g' => 'ccl', 'Ciclev10025485m.g' => 'ccl', 'Ciclev10025676m.g' => 'ccl', 'Ciclev10027240m.g' => 'ccl', 'Ciclev10027447m.g' => 'ccl', 'Ciclev10027465m.g' => 'ccl', 'CiPaw.03G202700' => 'cil', 'CiPaw.04G140800' => 'cil', 'CiPaw.04G192900' => 'cil', 'CiPaw.09G125800' => 'cil', 'CiPaw.10G093000' => 'cil', 'CiPaw.11G118500' => 'cil', 'ClCG02G018200' => 'cla', 'ClCG03G007010' => 'cla', 'ClCG03G014810' => 'cla', 'COL.COLO4_02911' => 'col', 'COL.COLO4_05386' => 'col', 'COL.COLO4_10735' => 'col', 'COL.COLO4_21224' => 'col', 'COL.COLO4_30810' => 'col', 'COL.COLO4_38292' => 'col', 'COL.COLO4_38293' => 'col', 'Cpa.g.sc132.49' => 'cpa', 'Cpa.g.sc132.50' => 'cpa', 'Cpa.g.sc166.28' => 'cpa', 'Cpa.g.sc261.5' => 'cpa', 'Cpa.g.sc79.6' => 'cpa', 'Cre07.g335300' => 'cre', 'Cre10.g438050' => 'cre', 'Cre11.g467723' => 'cre', 'CsaV3_1G032580' => 'csa', 'CsaV3_1G041340' => 'csa', 'CsaV3_6G015580' => 'csa', 'CSS0007756' => 'camsi', 'CSS0010451' => 'camsi', 'CSS0014147' => 'camsi', 'CSS0026855' => 'camsi', 'CSS0028079' => 'camsi', 'CSS0038147' => 'camsi', 'CSS0040036' => 'camsi', 'CSS0040230' => 'camsi', 'CSS0049297' => 'camsi', 'CSS0049875' => 'camsi', 'DCAR_000462' => 'dca', 'DCAR_003925' => 'dca', 'DCAR_003929' => 'dca', 'DCAR_006519' => 'dca', 'DCAR_019736' => 'dca', 'DCAR_023707' => 'dca', 'DCAR_023708' => 'dca', 'Dinv08704' => 'din', 'Dinv10625' => 'din', 'Dinv20406' => 'din', 'Dinv25525' => 'din', 'Dinv29271' => 'din', 'Dinv30720' => 'din', 'Dinv30817' => 'din', 'Dinv35341' => 'din', 'Dinv37507' => 'din', 'Dinv38817' => 'din', 'Dinv42422' => 'din', 'Dinv42423' => 'din', 'Duzib084G0242' => 'dzi', 'Duzib133G0031' => 'dzi', 'Duzib138G1396' => 'dzi', 'Duzib150G0450' => 'dzi', 'Duzib168G0007' => 'dzi', 'Duzib187G1496' => 'dzi', 'Duzib192G0663' => 'dzi', 'Duzib205G1070' => 'dzi', 'Duzib235G0144' => 'dzi', 'Duzib235G0331' => 'dzi', 'Duzib235G0590' => 'dzi', 'Duzib235G0992' => 'dzi', 'ECA232G2125' => 'eca', 'ECA232G3903' => 'eca', 'ECA234G1979' => 'eca', 'ECA234G2576' => 'eca', 'ECA236G3232' => 'eca', 'ECA236G3769' => 'eca', 'ECA236G4050' => 'eca', 'ECA240G1808' => 'eca', 'ECA240G2788' => 'eca', 'ECA246G0824' => 'eca', 'ECA246G4489' => 'eca', 'ECA248G1197' => 'eca', 'ECA248G3167' => 'eca', 'ECA248G3642' => 'eca', 'EL10Ac8g19017' => 'bvu', 'EL10Ac9g22789' => 'bvu', 'EL10As10g23971' => 'bvu', 'Eucgr.C00778' => 'egr', 'Eucgr.C03291' => 'egr', 'Eucgr.D00305' => 'egr', 'Eucgr.D01763' => 'egr', 'Eucgr.K00728' => 'egr', 'Eucgr.L03681' => 'egr', 'FAN02G0028' => 'fan', 'FAN02G4210' => 'fan', 'FAN04G0221' => 'fan', 'FAN05G5831' => 'fan', 'FAN08G1740' => 'fan', 'FAN09G1723' => 'fan', 'FAN09G3712' => 'fan', 'FAN11G2198' => 'fan', 'FAN11G2321' => 'fan', 'FAN13G0350' => 'fan', 'FAN14G0144' => 'fan', 'FAN14G2358' => 'fan', 'FAN16G3268' => 'fan', 'FAN18G0539' => 'fan', 'FAN18G3136' => 'fan', 'FAN19G1304' => 'fan', 'FAN21G1824' => 'fan', 'FAN23G2039' => 'fan', 'FAN26G0141' => 'fan', 'FAN26G1885' => 'fan', 'FAN28G0749' => 'fan', 'FAN28G1025' => 'fan', 'FvH4_1g09200' => 'fve', 'FvH4_3g05870' => 'fve', 'FvH4_4g11731' => 'fve', 'FvH4_5g11700' => 'fve', 'FvH4_6g35220' => 'fve', 'FvH4_6g41780' => 'fve', 'FvH4_c21g00010' => 'fve', 'Glyma.05G129600' => 'gma', 'Glyma.05G218600' => 'gma', 'Glyma.08G024700' => 'gma', 'Glyma.08G084300' => 'gma', 'Glyma.10G041100' => 'gma', 'Glyma.11G180750' => 'gma', 'Glyma.13G112700' => 'gma', 'Glyma.13G128000' => 'gma', 'Glyma.15G181500' => 'gma', 'Glyma.17G047000' => 'gma', 'Glyma.18G091100' => 'gma', 'Gohir.A05G149700' => 'ghi', 'Gohir.A06G079000' => 'ghi', 'Gohir.A06G136802' => 'ghi', 'Gohir.A08G112000' => 'ghi', 'Gohir.A08G246500' => 'ghi', 'Gohir.A09G075300' => 'ghi', 'Gohir.A09G078000' => 'ghi', 'Gohir.A11G151800' => 'ghi', 'Gohir.A12G040400' => 'ghi', 'Gohir.A13G189400' => 'ghi', 'Gohir.D05G152300' => 'ghi', 'Gohir.D06G078350' => 'ghi', 'Gohir.D06G142000' => 'ghi', 'Gohir.D07G083750' => 'ghi', 'Gohir.D08G125000' => 'ghi', 'Gohir.D08G267700' => 'ghi', 'Gohir.D09G075000' => 'ghi', 'Gohir.D09G078200' => 'ghi', 'Gohir.D09G141866' => 'ghi', 'Gohir.D11G158800' => 'ghi', 'Gohir.D13G196305' => 'ghi', 'Gorai.004G131800' => 'gra', 'Gorai.004G285300' => 'gra', 'Gorai.006G090100' => 'gra', 'Gorai.006G093400' => 'gra', 'Gorai.006G138500' => 'gra', 'Gorai.007G169200' => 'gra', 'Gorai.009G156400' => 'gra', 'Gorai.009G236800' => 'gra', 'Gorai.010G091400' => 'gra', 'Gorai.010G165600' => 'gra', 'Gorai.013G222600' => 'gra', 'GSVIVG01015032001' => 'vvi', 'GSVIVG01016060001' => 'vvi', 'GSVIVG01016710001' => 'vvi', 'GSVIVG01019565001' => 'vvi', 'GSVIVG01021425001' => 'vvi', 'GSVIVG01030537001' => 'vvi', 'HanXRQChr01g0019841' => 'han', 'HanXRQChr01g0020441' => 'han', 'HanXRQChr03g0083201' => 'han', 'HanXRQChr04g0118391' => 'han', 'HanXRQChr05g0151651' => 'han', 'HanXRQChr06g0178221' => 'han', 'HanXRQChr08g0235451' => 'han', 'HanXRQChr08g0235461' => 'han', 'HanXRQChr09g0237851' => 'han', 'HanXRQChr09g0254031' => 'han', 'HanXRQChr11g0349241' => 'han', 'HanXRQChr13g0415471' => 'han', 'HanXRQChr14g0427861' => 'han', 'HanXRQChr15g0471281' => 'han', 'HanXRQChr15g0497191' => 'han', 'HanXRQChr16g0508321' => 'han', 'HanXRQChr17g0535001' => 'han', 'HanXRQChr17g0564321' => 'han', 'Haze_05567' => 'cav', 'Haze_09096' => 'cav', 'Haze_12744' => 'cav', 'Haze_26050' => 'cav', 'Haze_26085' => 'cav', 'Haze_27082' => 'cav', 'Hma1.2p1_0049F.1_g028540' => 'hma', 'Hma1.2p1_0133F.1_g060830' => 'hma', 'Hma1.2p1_0133F.1_g060840' => 'hma', 'Hma1.2p1_0137F.1_g062510' => 'hma', 'Hma1.2p1_0179F.1_g079260' => 'hma', 'Hma1.2p1_0359F.1_g135080' => 'hma', 'Hma1.2p1_0440F.1_g153500' => 'hma', 'HPP92_002526' => 'vpl', 'HPP92_008180' => 'vpl', 'HPP92_009418' => 'vpl', 'HPP92_016608' => 'vpl', 'HPP92_025282' => 'vpl', 'Hund15399' => 'sun', 'Hund21520' => 'sun', 'Hund24128' => 'sun', 'Hund24130' => 'sun', 'Hund25829' => 'sun', 'Hund30947' => 'sun', 'Lalb_Chr06g0170771' => 'lal', 'Lalb_Chr07g0181341' => 'lal', 'Lalb_Chr07g0188671' => 'lal', 'Lalb_Chr08g0232771' => 'lal', 'Lalb_Chr11g0074051' => 'lal', 'Lalb_Chr13g0299301' => 'lal', 'Lalb_Chr16g0390711' => 'lal', 'Lj1A785G51' => 'lonja', 'Lj1g0011401' => 'lja', 'Lj1g0014318' => 'lja', 'Lj2A161T23' => 'lonja', 'Lj2A307T31' => 'lonja', 'Lj3g0011047' => 'lja', 'Lj4C919T3' => 'lonja', 'Lj4g0004408' => 'lja', 'Lj4g0010203' => 'lja', 'Lj4g0025201' => 'lja', 'Lj4g0026089' => 'lja', 'Lj5A32G59' => 'lonja', 'Lj5A32T67' => 'lonja', 'Lj5g0007431' => 'lja', 'Lj5g0007920' => 'lja', 'Lj5g0022919' => 'lja', 'Lj5g0026035' => 'lja', 'Lj6g0022420' => 'lja', 'Lj7A690T50' => 'lonja', 'Lj8A205G37' => 'lonja', 'Lsat_1_v5_gn_1_93080' => 'lsa', 'Lsat_1_v5_gn_1_93160' => 'lsa', 'Lsat_1_v5_gn_1_95780' => 'lsa', 'Lsat_1_v5_gn_1_96120' => 'lsa', 'Lsat_1_v5_gn_1_96220' => 'lsa', 'Lsat_1_v5_gn_1_96420' => 'lsa', 'Lsat_1_v5_gn_1_96481' => 'lsa', 'Lsat_1_v5_gn_1_96501' => 'lsa', 'Lsat_1_v5_gn_1_96881' => 'lsa', 'Lsat_1_v5_gn_3_117780' => 'lsa', 'Lsat_1_v5_gn_3_11820' => 'lsa', 'Lsat_1_v5_gn_4_164120' => 'lsa', 'Lsat_1_v5_gn_4_25920' => 'lsa', 'Lsat_1_v5_gn_4_28981' => 'lsa', 'Lsat_1_v5_gn_4_91301' => 'lsa', 'Lsat_1_v5_gn_4_95720' => 'lsa', 'Lsat_1_v5_gn_5_139341' => 'lsa', 'Lsat_1_v5_gn_5_145761' => 'lsa', 'Lsat_1_v5_gn_5_170241' => 'lsa', 'Lsat_1_v5_gn_5_175140' => 'lsa', 'Lsat_1_v5_gn_6_48280' => 'lsa', 'Lsat_1_v5_gn_6_84181' => 'lsa', 'Lsat_1_v5_gn_6_99820' => 'lsa', 'Lsat_1_v5_gn_7_30541' => 'lsa', 'Lsat_1_v5_gn_7_35360' => 'lsa', 'Lsat_1_v5_gn_7_89300' => 'lsa', 'Lsat_1_v5_gn_7_94701' => 'lsa', 'Lsat_1_v5_gn_8_86040' => 'lsa', 'Manes.02G007650' => 'mes', 'Manes.03G043700' => 'mes', 'Manes.04G148300' => 'mes', 'Manes.04G149701' => 'mes', 'Manes.13G064800' => 'mes', 'Manes.15G120000' => 'mes', 'Manes.16G091400' => 'mes', 'Mapoly0002s0312' => 'mpo', 'Mapoly0035s0037' => 'mpo', 'Mapoly0191s0005' => 'mpo', 'MBI06_g10866_MAGBIO' => 'mbi', 'MBI07_g37204_MAGBIO' => 'mbi', 'MBI08_g18898_MAGBIO' => 'mbi', 'MBI13_g30073_MAGBIO' => 'mbi', 'MBI14_g02870_MAGBIO' => 'mbi', 'MCO02G400' => 'mco', 'MCO03G093' => 'mco', 'MCO03G333' => 'mco', 'MCO13G022' => 'mco', 'MD02G1097200' => 'mdo', 'MD02G1097500' => 'mdo', 'MD02G1098000' => 'mdo', 'MD02G1098500' => 'mdo', 'MD02G1101500' => 'mdo', 'MD05G1286700' => 'mdo', 'MD06G1110900' => 'mdo', 'MD09G1117200' => 'mdo', 'MD09G1177500' => 'mdo', 'MD09G1177600' => 'mdo', 'MD10G1264200' => 'mdo', 'MD14G1131500' => 'mdo', 'MD15G1221800' => 'mdo', 'MD15G1342600' => 'mdo', 'Medtr1g069385' => 'mtr', 'Medtr1g103020' => 'mtr', 'Medtr2g043530' => 'mtr', 'Medtr4g096690' => 'mtr', 'Medtr4g124880' => 'mtr', 'Medtr8g099695' => 'mtr', 'Medtr8g099700' => 'mtr', 'Medtr8g099705' => 'mtr', 'Medtr8g099715' => 'mtr', 'MELO3C002722.2' => 'cme', 'MELO3C015546.2' => 'cme', 'MELO3C019716.2' => 'cme', 'Migut.A00612' => 'egut', 'Migut.E01277' => 'egut', 'Migut.E01278' => 'egut', 'Migut.F02001' => 'egut', 'Migut.H01372' => 'egut', 'Migut.J00897' => 'egut', 'Migut.L01589' => 'egut', 'MSTRG.10490' => 'ama', 'MSTRG.11907' => 'ama', 'MSTRG.13249' => 'ama', 'MSTRG.16228' => 'ama', 'MSTRG.19436' => 'ama', 'MSTRG.26492' => 'ama', 'MSTRG.27459' => 'ama', 'MSTRG.7475' => 'ama', 'Nitab4.5_0000073g0360' => 'nta', 'Nitab4.5_0000130g0180' => 'nta', 'Nitab4.5_0000348g0200' => 'nta', 'Nitab4.5_0001040g0120' => 'nta', 'Nitab4.5_0001565g0080' => 'nta', 'Nitab4.5_0001655g0210' => 'nta', 'Nitab4.5_0001962g0100' => 'nta', 'Nitab4.5_0002231g0070' => 'nta', 'Nitab4.5_0002443g0060' => 'nta', 'Nitab4.5_0007773g0040' => 'nta', 'Nitab4.5_0008711g0010' => 'nta', 'Nitab4.5_0008746g0030' => 'nta', 'Nn1g00270' => 'nnu', 'Nn1g07966' => 'nnu', 'Nn4g26543' => 'nnu', 'Nn6g35657' => 'nnu', 'Nn8g38556' => 'nnu', 'Oeu000294.1' => 'oeu', 'Oeu007428.1' => 'oeu', 'Oeu008522.1' => 'oeu', 'Oeu010830.1' => 'oeu', 'Oeu030911.1' => 'oeu', 'Oeu040110.1' => 'oeu', 'Oeu042061.1' => 'oeu', 'Oeu043936.2' => 'oeu', 'Oeu052382.1' => 'oeu', 'Oeu055336.2' => 'oeu', 'Oeu058007.1' => 'oeu', 'Oeu063505.1' => 'oeu', 'Os02g0196900' => 'osa', 'Os04g0445700' => 'osa', 'Os06g0196600' => 'osa', 'Os07g0616200' => 'osa', 'Peaxi162Scf00038g01959' => 'pax', 'Peaxi162Scf00074g00622' => 'pax', 'Peaxi162Scf00102g01864' => 'pax', 'Peaxi162Scf00102g01865' => 'pax', 'Peaxi162Scf00191g00123' => 'pax', 'Peaxi162Scf00928g00230' => 'pax', 'Peaxi162Scf01205g00019' => 'pax', 'Peaxi162Scf01205g00158' => 'pax', 'Peaxi162Scf01333g00134' => 'pax', 'PGR004G0976' => 'pgr', 'PGR031G3230' => 'pgr', 'PGR142G0280' => 'pgr', 'PGSC0003DMG400002927' => 'stu', 'PGSC0003DMG400006426' => 'stu', 'PGSC0003DMG400008311' => 'stu', 'PGSC0003DMG400012262' => 'stu', 'PGSC0003DMG400013579' => 'stu', 'PGSC0003DMG400022891' => 'stu', 'PGSC0003DMG400030158' => 'stu', 'Phvul.002G194300' => 'pvu', 'Phvul.002G300400' => 'pvu', 'Phvul.003G128700' => 'pvu', 'Phvul.007G154300' => 'pvu', 'Potri.001G088700' => 'ptr', 'Potri.002G219500' => 'ptr', 'Potri.003G142000' => 'ptr', 'Potri.004G131500' => 'ptr', 'Potri.006G138000' => 'ptr', 'Potri.011G079700' => 'ptr', 'Potri.018G062900' => 'ptr', 'Pp3c12_20620' => 'ppa', 'Pp3c12_7680' => 'ppa', 'Pp3c13_3620' => 'ppa', 'Pp3c13_4190' => 'ppa', 'Pp3c13_8990' => 'ppa', 'Pp3c26_4590' => 'ppa', 'Pp3c4_20170' => 'ppa', 'Pp3c4_25050' => 'ppa', 'Pp3c4_8490' => 'ppa', 'PRCOL_00000873' => 'pco', 'PRCOL_00005527' => 'pco', 'Prupe.3G036900' => 'ppe', 'Prupe.3G206600' => 'ppe', 'Prupe.4G078200' => 'ppe', 'Prupe.5G123300' => 'ppe', 'Prupe.7G193900' => 'ppe', 'Psat1g137640' => 'psa', 'Psat4g018240' => 'psa', 'Psat5g051680' => 'psa', 'Psat5g269320' => 'psa', 'Psat5g269360' => 'psa', 'Psat6g064320' => 'psa', 'Psat6g064360' => 'psa', 'Psat6g215480' => 'psa', 'Psat7g023920' => 'psa', 'Psat7g090680' => 'psa', 'PSO104G0069' => 'pso', 'PSO135G1050' => 'pso', 'PSO210G3553' => 'pso', 'PSO229G0071' => 'pso', 'PSO302G0194' => 'pso', 'PSO384G4744' => 'pso', 'PSO386G0084' => 'pso', 'PSO421G0260' => 'pso', 'PSO421G0382' => 'pso', 'PSO541G3695' => 'pso', 'PSO675G0712' => 'pso', 'PSO675G6625' => 'pso', 'PSO675G8811' => 'pso', 'PSO724G0493' => 'pso', 'QL02p029819' => 'qlo', 'QL05p003264' => 'qlo', 'QL05p003283' => 'qlo', 'QL05p058986' => 'qlo', 'QL08p029874' => 'qlo', 'QL08p029882' => 'qlo', 'QL11p002123' => 'qlo', 'QL11p002135' => 'qlo', 'QL11p002141' => 'qlo', 'QL11p011535' => 'qlo', 'QL93p0414_0005' => 'qlo', 'QL93p0414_0021' => 'qlo', 'RcHm_v2.0_Chr2g0095651' => 'rch', 'RcHm_v2.0_Chr2g0146561' => 'rch', 'RcHm_v2.0_Chr2g0157571' => 'rch', 'RcHm_v2.0_Chr5g0013571' => 'rch', 'RcHm_v2.0_Chr5g0013611' => 'rch', 'RcHm_v2.0_Chr7g0186071' => 'rch', 'Rhsim02G0247500' => 'rsi', 'Rhsim03G0209300' => 'rsi', 'Rhsim03G0209400' => 'rsi', 'Rhsim03G0226300' => 'rsi', 'Rhsim05G0003900' => 'rsi', 'Rhsim06G0170000' => 'rsi', 'Rhsim13G0127100' => 'rsi', 'Sabra01G0064900' => 'sbr', 'Sabra02G0171100' => 'sbr', 'Sabra03G0102800' => 'sbr', 'Sabra04G0086400' => 'sbr', 'Sabra06G0108100' => 'sbr', 'Sabra11G0068500' => 'sbr', 'Sabra11G0070600' => 'sbr', 'Sabra18G0055800' => 'sbr', 'SalBow1G1807' => 'sbo', 'SalBow1G7179' => 'sbo', 'SalBow4G1832' => 'sbo', 'SalBow5G4980' => 'sbo', 'SalBow6G1021' => 'sbo', 'SalBow6G1201' => 'sbo', 'SalBow6G3251' => 'sbo', 'SalBow6G4660' => 'sbo', 'SalBow8G0569' => 'sbo', 'SalBow8G1184' => 'sbo', 'SalBow8G1262' => 'sbo', 'SalBow8G1286' => 'sbo', 'SalBow8G1768' => 'sbo', 'SalBow8G3093' => 'sbo', 'SalBow8G3370' => 'sbo', 'SalBow8G3440' => 'sbo', 'Sc08g0003660' => 'sci', 'Sc08g0008980' => 'sci', 'Sc20g0005080' => 'sci', 'Sed0001956' => 'sed', 'Sed0002760' => 'sed', 'Sed0007761' => 'sed', 'Sed0013983' => 'sed', 'Sed0016142' => 'sed', 'Sed0022363' => 'sed', 'Sed0022404' => 'sed', 'Sed0022490' => 'sed', 'SEGI_02920' => 'sgi', 'SEGI_13864' => 'sgi', 'SEGI_17764' => 'sgi', 'SEGI_25553' => 'sgi', 'SEGI_32642' => 'sgi', 'SEGI_36236' => 'sgi', 'SGA_v2.0_scaffold1G00155' => 'sas', 'SGA_v2.0_scaffold21G09542' => 'sas', 'SGA_v2.0_scaffold296G47569' => 'sas', 'SGA_v2.0_scaffold333G49000' => 'sas', 'SGA_v2.0_scaffold478G52232' => 'sas', 'SHI39307' => 'shi', 'SHI39546' => 'shi', 'SMO116G0291' => 'smo', 'SMO146G0232' => 'smo', 'SMO203G0198' => 'smo', 'SMO343G0087' => 'smo', 'SMO351G0052' => 'smo', 'SMO364G0220' => 'smo', 'SMO367G0392' => 'smo', 'Solyc02g070790.3' => 'sly', 'Solyc03g122100.3' => 'sly', 'Solyc03g122120.4' => 'sly', 'Solyc07g042315.1' => 'sly', 'Solyc07g049570.3' => 'sly', 'Solyc08g016170.3' => 'sly', 'Solyc08g082620.3' => 'sly', 'Solyc12g009260.3' => 'sly', 'Sopen02g019880' => 'spe', 'Sopen03g040890' => 'spe', 'Sopen03g040910' => 'spe', 'Sopen07g021960' => 'spe', 'Sopen07g024940' => 'spe', 'Sopen07g024970' => 'spe', 'Sopen08g006520' => 'spe', 'Sopen08g030860' => 'spe', 'Sopen12g004230' => 'spe', 'Sp1g17170' => 'spa', 'Sp2g11140' => 'spa', 'Sp3g23320' => 'spa', 'Sp5g30100' => 'spa', 'Sp6g34820' => 'spa', 'TAR383G0547' => 'tar', 'TAR468G0002' => 'tar', 'TAR624G0414' => 'tar', 'TAR624G0711' => 'tar', 'TAR624G1377' => 'tar', 'TAR626G0452' => 'tar', 'TAR629G1474' => 'tar', 'TAR636G1378' => 'tar', 'THA.LOC104806123' => 'tha', 'THA.LOC104808867' => 'tha', 'THA.LOC104809050' => 'tha', 'THA.LOC104812849' => 'tha', 'THA.LOC104813853' => 'tha', 'THA.LOC104824520' => 'tha', 'Thecc.01G187600' => 'tca', 'Thecc.03G301300' => 'tca', 'Thecc.06G125500' => 'tca', 'Thecc.06G125600' => 'tca', 'Thecc.06G153000' => 'tca', 'Thecc.09G071900' => 'tca', 'Thhalv10000874m.g' => 'esa', 'Thhalv10002523m.g' => 'esa', 'Thhalv10007353m.g' => 'esa', 'Thhalv10018368m.g' => 'esa', 'TPR.G12575' => 'tpr', 'TPR.G17941' => 'tpr', 'TPR.G3433' => 'tpr', 'TPR.G35707' => 'tpr', 'TPR.G36563' => 'tpr', 'TPR.G4880' => 'tpr', 'TWI09G0896' => 'twi', 'TWI15G0731' => 'twi', 'TWI32G0894' => 'twi', 'TWI34G0470' => 'twi', 'TWI73G0693' => 'twi', 'TWI75G0266' => 'twi', 'TWI81G0313' => 'twi', 'unitig_26.g10106' => 'ugi', 'unitig_749.g13711' => 'ugi', 'unitig_8.g3537' => 'ugi', 'unitig_85.g27432' => 'ugi', 'vmacro06354' => 'vma', 'vmacro06388' => 'vma', 'vmacro06389' => 'vma', 'vmacro11542' => 'vma', 'vmacro12143' => 'vma', 'vmacro12801' => 'vma', 'vmacro17097' => 'vma', 'vmacro17098' => 'vma', 'vmacro21819' => 'vma', 'vmacro23082' => 'vma', 'VMungo0251G1544' => 'vmu', 'VMungo0251G1771' => 'vmu', 'VMungo0464G1079' => 'vmu', 'VMungo0720G0104' => 'vmu', 'VMungo1215G0335' => 'vmu', 'Zm00001eb109290' => 'zma', 'Zm00001eb236130' => 'zma', 'Zm00001eb278580' => 'zma', 'Zm00001eb327480' => 'zma', 'Zm00001eb373980' => 'zma', 'Zm00001eb392890' => 'zma' ) $gf_id = 'HOM05D000736' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000736' ) $data_identifier = 'HOM05D000736' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 19, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 14, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 9, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 14, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 12, 'lsa' => (int) 28, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 4, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 16, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392890' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1